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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1316446_1317117_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1316446 - 1317117
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCCTCTCACT
Flanking Amino Acid:
TRVALEDWLPRDLWREINWL
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
76.3
0.59
0.8
69.2
29.9
Minor 5ss
33.9
-1.8
3.3
47.6
48
Minor BPS
49.6
0.05
2.1
73.75
43.2

Associated Gene:

Gene:
NTHL1
Ensembl Gene ID:
ENSAPLG00000008412
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008743
1311740 - 1317241
5502