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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13166770_13168269_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13166770 - 13168269
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATATA
5'SS Class:
major
3'SS Sequence:
ACTTATTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTACTTATTC
Flanking Amino Acid:
KNTFFEGLYEHGKDFEAIQN
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
80.6
33.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
81
0.7
0.8
77.7
35.7
Minor 5ss
37.6
-1.4
3.1
51
45.5
Minor BPS
66.5
0.5
1.8
79.36
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011339
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011810
13156984 - 13186744
29761
ENSAPLT00000034494
13155304 - 13186744
31441
ENSAPLT00000020902
13156984 - 13186739
29756