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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13175778_13176524_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13175778 - 13176524
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CTTTCTTTGACC
Flanking Amino Acid:
RALKKLCDPDGISDEEDQKP
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
81.6
0.71
0.8
78.3
30.1
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
78.5
0.88
1.1
81.35
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011339
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011810
13156984 - 13186744
29761
ENSAPLT00000034494
13155304 - 13186744
31441
ENSAPLT00000020902
13156984 - 13186739
29756