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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13176649_13177712_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13176649 - 13177712
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
ACCTTGCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTGCTTTACCT
Flanking Amino Acid:
VQSLAQNPRLRMIVELHRKV
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.7
0.42
1
61.4
38.7
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
58.6
0.35
1.7
73.4
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011339
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034494
13155304 - 13186744
31441
ENSAPLT00000020902
13156984 - 13186739
29756
ENSAPLT00000011810
13156984 - 13186744
29761