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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13180073_13181554_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13180073 - 13181554
Intron Length:
1482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CTCACATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTCATTTAATG
Flanking Amino Acid:
LISTEVNPKPTPEMSSVATS
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.8
0.51
0.8
69.7
35.5
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
59.8
0.17
1.5
64.24
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011339
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034494
13155304 - 13186744
31441
ENSAPLT00000020902
13156984 - 13186739
29756
ENSAPLT00000011810
13156984 - 13186744
29761