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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13181733_13183596_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13181733 - 13183596
Intron Length:
1864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TGAAATCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCCACTTAATT
Flanking Amino Acid:
FSPGAASSSSGLRNLPRPLL
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.3
30.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
65.3
0.35
1
55.3
45.1
Minor 5ss
29.2
-2.4
3.2
41.3
45.2
Minor BPS
69.6
0.69
1.5
82.51
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011339
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034494
13155304 - 13186744
31441