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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13202779_13204212_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13202779 - 13204212
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTCTGTGAA
5'SS Class:
weak_major
3'SS Sequence:
TAGGGTATTGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGGGTAT
U12 Branch Point Sequence:
AGGGTATTGAAG
Flanking Amino Acid:
AKVESAKPCHPPGGGSSNLF
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.5
61.2
39.7
Major BPS
43
-0.4
1.5
34.9
43.5
Major PPT
55.5
0.12
1.2
53.6
44.7
Minor 5ss
34.9
-1.7
3
39.2
40
Minor BPS
41.1
-0.8
1.7
38.94
38

Associated Gene:

Gene:
JPT2
Ensembl Gene ID:
ENSAPLG00000011858
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012352
13202737 - 13207733
4997