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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13204352_13204719_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13204352 - 13204719
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
AATTGCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TCATCTGGAAAA
Flanking Amino Acid:
QNFPKRTNPPGGKESGIFED
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
75.8
0.58
0.9
70.8
40.1
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
45.4
-0.3
2.1
58.09
41.4

Associated Gene:

Gene:
JPT2
Ensembl Gene ID:
ENSAPLG00000011858
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012352
13202737 - 13207733
4997