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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13204863_13206764_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13204863 - 13206764
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTA
5'SS Class:
major
3'SS Sequence:
GGTTTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTGGTTTCATT
Flanking Amino Acid:
VVRAHPNKPKDHIVLKEDET
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
77.5
0.62
0.9
70.5
39.9
Minor 5ss
42.4
-0.8
3.1
58.1
46.4
Minor BPS
48.6
-0
2.2
74.65
43.4

Associated Gene:

Gene:
JPT2
Ensembl Gene ID:
ENSAPLG00000011858
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012352
13202737 - 13207733
4997