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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13206811_13207548_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13206811 - 13207548
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCAAC
5'SS Class:
major
3'SS Sequence:
TCTTATTGTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTG
Flanking Amino Acid:
KEDETPKKPEAAENNKPQLE
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
72.3
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.9
0.72
0.9
80.5
36.7
Minor 5ss
35.1
-1.7
2.8
43
44.2
Minor BPS
68.9
0.45
1.6
74.56
38.3

Associated Gene:

Gene:
JPT2
Ensembl Gene ID:
ENSAPLG00000011858
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012352
13202737 - 13207733
4997