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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13224662_13241288_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13224662 - 13241288
Intron Length:
16627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCCAT
U12 Branch Point Sequence:
TTTGGGCTAAGT
Flanking Amino Acid:
AVPSPSCPRGGFSQASGMSS
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
68.5
0.46
1.2
78.5
35.1
Major PPT
80.6
0.69
0.7
73.6
31.4
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
39.8
-0.6
2.7
67.91
48.7

Associated Gene:

Gene:
CARHSP1
Ensembl Gene ID:
ENSAPLG00000026317
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040980
13224532 - 13258312
33781