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Intron Name: Anas_platyrhynchos_platyrhynchos_15_13228782_13241288_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

13228782 - 13241288

Intron Length:

12507

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCTGC

5'SS Class:

major

3'SS Sequence:

TTCCTCTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTCCAT

U12 Branch Point Sequence:

TTTGGGCTAAGT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

1.1

64.1

43.4

Major BPS

68.5

0.46

1.2

78.5

35.1

Major PPT

80.6

0.69

0.7

73.6

31.4

Minor 5ss

42.8

-0.8

3.2

58.8

46.1

Minor BPS

39.8

-0.6

2.7

67.91

48.7

Associated Gene:

Gene:

CARHSP1

Ensembl Gene ID:

ENSAPLG00000026317

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026238

13228466 - 13258312

29847