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Intron Name: Anas_platyrhynchos_platyrhynchos_15_13232342_13241288_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

13232342 - 13241288

Intron Length:

8947

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATGA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTCCAT

U12 Branch Point Sequence:

TTTGGGCTAAGT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

71.1

35.5

Major BPS

68.5

0.46

1.2

78.5

35.1

Major PPT

80.6

0.69

0.7

73.6

31.4

Minor 5ss

36.7

-1.5

3.1

47.8

47.6

Minor BPS

39.8

-0.6

2.7

67.91

48.7

Associated Gene:

Gene:

CARHSP1

Ensembl Gene ID:

ENSAPLG00000026317

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031836

13232227 - 13258312

26086