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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13241482_13244202_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13241482 - 13244202
Intron Length:
2721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TATGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
CGCTCAGCAACA
Flanking Amino Acid:
LPTRRTRTFSATVRASEGPI
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.3
77.8
38.7
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
86.1
0.81
0.8
80.9
36.4
Minor 5ss
37.2
-1.5
2.9
46.9
41.8
Minor BPS
42.2
-0.6
2.3
53.34
44.7

Associated Gene:

Gene:
CARHSP1
Ensembl Gene ID:
ENSAPLG00000026317
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026238
13228466 - 13258312
29847
ENSAPLT00000040980
13224532 - 13258312
33781
ENSAPLT00000031836
13232227 - 13258312
26086
ENSAPLT00000031429
13239475 - 13257488
18014