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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13244326_13257325_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13244326 - 13257325
Intron Length:
13000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATGATTAACT
Flanking Amino Acid:
GGPDIFVHISDIEGEYVPVA
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.5
39.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
85.2
0.79
0.7
80.5
25
Minor 5ss
43.2
-0.7
2.8
54.8
43.5
Minor BPS
65
0.55
2
86.33
39.2

Associated Gene:

Gene:
CARHSP1
Ensembl Gene ID:
ENSAPLG00000026317
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040980
13224532 - 13258312
33781
ENSAPLT00000031836
13232227 - 13258312
26086
ENSAPLT00000031429
13239475 - 13257488
18014
ENSAPLT00000026238
13228466 - 13258312
29847