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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13259990_13261641_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13259990 - 13261641
Intron Length:
1652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAAAGAC
5'SS Class:
major
3'SS Sequence:
CACACTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AGCCTTCTAACA
Flanking Amino Acid:
TRRICEELFFKVIQPQPF*
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
65.6
32.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
62.8
0.29
0.8
54
36.1
Minor 5ss
31.8
-2.1
3.5
41.3
39.7
Minor BPS
48.3
-0.1
1.6
56.18
36.6

Associated Gene:

Gene:
PMM2
Ensembl Gene ID:
ENSAPLG00000012003
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012505
13258965 - 13269338
10374