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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1326910_1329680_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1326910 - 1329680
Intron Length:
2771

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACG|GCGCGCACA
5'SS Class:
major
3'SS Sequence:
TTCTTTCAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTTCTTTCAAT
Flanking Amino Acid:
PGCDTPLAGTDLNGQKELCP
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.1
0.26
1.3
56.8
42.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
77.9
0.63
0.9
78.8
33.5
Minor 5ss
23.3
-3.1
3.8
32
42.3
Minor BPS
62
0.46
1.9
80.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008441
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008775
1320456 - 1329797
9342