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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13281035_13281772_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13281035 - 13281772
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGAGTT
5'SS Class:
major
3'SS Sequence:
ATCCTTTTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTTCCGCAACT
Flanking Amino Acid:
FHKEEFRPNAPYRIFNTWLG
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
72.3
37.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
73
0.52
1
71.3
38.1
Minor 5ss
39.3
-1.2
3.7
66.3
44.6
Minor BPS
60.8
0.42
2.2
85.32
40.8

Associated Gene:

Gene:
ABAT
Ensembl Gene ID:
ENSAPLG00000012308
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012859
13280386 - 13315339
34954