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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13281941_13283354_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13281941 - 13283354
Intron Length:
1414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CTTTTTCCATCT
Flanking Amino Acid:
FRKLRDIARKHGCAFLVDEV
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78.2
0.64
0.8
72.3
32.5
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
45.2
-0.2
2
67.98
43.3

Associated Gene:

Gene:
ABAT
Ensembl Gene ID:
ENSAPLG00000012308
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012859
13280386 - 13315339
34954