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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13285733_13287316_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13285733 - 13287316
Intron Length:
1584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATTG
5'SS Class:
major
3'SS Sequence:
GCTTTGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TGACCACTCACT
Flanking Amino Acid:
EELESCMINQPPGCPDYAML
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.1
72.5
39.9
Major BPS
64.9
0.37
1
67
29.8
Major PPT
80.7
0.69
0.9
76.9
37.3
Minor 5ss
47.1
-0.3
2.9
64.8
46.5
Minor BPS
44
-0.3
2.2
65.75
43.7

Associated Gene:

Gene:
ABAT
Ensembl Gene ID:
ENSAPLG00000012308
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012859
13280386 - 13315339
34954