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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13288682_13293562_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13288682 - 13293562
Intron Length:
4881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAATACTGAAAA
Flanking Amino Acid:
IKLLQQPQNLSTFVNRPALG
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
100
1.24
0.5
100
0
Major PPT
85.5
0.8
0.7
81.4
30.6
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
53.4
0.1
1.7
65.64
39.4

Associated Gene:

Gene:
ABAT
Ensembl Gene ID:
ENSAPLG00000012308
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012859
13280386 - 13315339
34954