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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13301678_13302686_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13301678 - 13302686
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATCT
Flanking Amino Acid:
KTEVPGPRSRELMKQLNGIQ
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.2
35.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.4
0.91
0.7
85.8
27.4
Minor 5ss
44.1
-0.6
2.8
56.3
41.9
Minor BPS
69.5
0.69
1.5
84.41
36.4

Associated Gene:

Gene:
ABAT
Ensembl Gene ID:
ENSAPLG00000012308
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012859
13280386 - 13315339
34954