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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13302785_13315223_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13302785 - 13315223
Intron Length:
12439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTT
Flanking Amino Acid:
LQQNSRLLVFGHRYISQAAA
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
86.3
0.82
0.7
81.1
30.8
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
68.3
0.65
1.8
89.23
35.4

Associated Gene:

Gene:
ABAT
Ensembl Gene ID:
ENSAPLG00000012308
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012859
13280386 - 13315339
34954