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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13366880_13376806_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13366880 - 13376806
Intron Length:
9927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATGATACTAACA
Flanking Amino Acid:
NITASHRQLLYMHGTFVILM
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.5
28.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
86.9
0.83
0.7
84.9
29.5
Minor 5ss
33
-1.9
2.8
41.3
38.3
Minor BPS
47
-0.2
1.9
60.38
39

Associated Gene:

Gene:
TMEM114
Ensembl Gene ID:
ENSAPLG00000013247
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013786
13365953 - 13383244
17292