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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13376945_13380257_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13376945 - 13380257
Intron Length:
3313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTATAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCCTGATTAACT
Flanking Amino Acid:
LMTGLLFLFGALVTLTGICV
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
70.7
35.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
38.6
-1.3
3.3
56.3
47.8
Minor BPS
57.7
0.32
2.1
76.66
45.8

Associated Gene:

Gene:
TMEM114
Ensembl Gene ID:
ENSAPLG00000013247
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013786
13365953 - 13383244
17292