Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13380498_13383194_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

13380498 - 13383194

Intron Length:

2697

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCACTG

5'SS Class:

major

3'SS Sequence:

TCTTTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TTTTCTTTATCT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.2

45.6

Major BPS

83.9

0.84

73.9

41.3

Major PPT

92.2

0.95

0.6

88.3

21.3

Minor 5ss

47.2

-0.3

2.9

65.1

46.1

Minor BPS

80.3

1.03

1.4

95.73

30.7

Associated Gene:

Gene:

TMEM114

Ensembl Gene ID:

ENSAPLG00000013247

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013786

13365953 - 13383244

17292