Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13401501_13425629_R

Intron Information:

Intron Rank:

134856

Intron Class:

major

Intron Phase:

Intron Coordinates:

13401501 - 13425629

Intron Length:

24129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTTAC

U12 Branch Point Sequence:

AGTACAATATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.4

33.4

Major BPS

62.6

0.31

1.2

55.1

41.7

Major PPT

90.3

0.91

0.7

88.4

28.7

Minor 5ss

42.4

-0.8

2.8

51.5

44.9

Minor BPS

45.2

-0.2

2.1

66.88

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019892

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018592

13400405 - 13426177

25773