About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13409048_13425629_R

Intron Information:

Intron Rank:
134859
Intron Class:
major
Intron Phase:
Intron Coordinates:
13409048 - 13425629
Intron Length:
16582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTTGTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
68.4
0.42
1.7
81
36.6
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
56.6
0.28
2.2
82.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019892
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031344
13408511 - 13426177
17667