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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13700245_13760045_R

Intron Information:

Intron Rank:
132108
Intron Class:
major
Intron Phase:
Intron Coordinates:
13700245 - 13760045
Intron Length:
59801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTCTTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.5
0.8
0.7
80.9
30.5
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
68.2
0.57
1.5
77.18
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018321
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032226
13700241 - 13760350
60110