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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13761099_13834356_R

Intron Information:

Intron Rank:
132110
Intron Class:
major
Intron Phase:
Intron Coordinates:
13761099 - 13834356
Intron Length:
73258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGTTTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018321
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042782
13708204 - 13834425
126222