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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1382828_1383405_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1382828 - 1383405
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAAGTAT
5'SS Class:
major
3'SS Sequence:
CCCTGTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TGCTGTTTGACC
Flanking Amino Acid:
GQTECFGKRRGEEEDRDVAA
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.2
61
40.1
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
71.3
0.48
0.8
65.3
30.6
Minor 5ss
33.7
-1.9
3.3
39.5
46.2
Minor BPS
56
0.17
1.8
65.88
40.5

Associated Gene:

Gene:
ZNF598
Ensembl Gene ID:
ENSAPLG00000008877
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019690
1378447 - 1388838
10392