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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1396157_1398133_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1396157 - 1398133
Intron Length:
1977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CATCCCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTCACCCCAACC
Flanking Amino Acid:
AFSFFSIAGWVALAVKALQR
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
66.6
0.37
1
61.8
34.4
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
48
-0.1
2
60.35
44.6

Associated Gene:

Gene:
SYNGR3
Ensembl Gene ID:
ENSAPLG00000019392
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040587
1394312 - 1407501
13190