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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13975193_13976910_F

Intron Information:

Intron Rank:
129727
Intron Class:
major
Intron Phase:
Intron Coordinates:
13975193 - 13976910
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TACATCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.5
0.64
0.9
69.4
41.3
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
77.3
0.85
1.5
88.36
28.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019814
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043709
13975178 - 14007347
32170