Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_13976960_14007164_F

Intron Information:

Intron Rank:

129726

Intron Class:

major

Intron Phase:

Intron Coordinates:

13976960 - 14007164

Intron Length:

30205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATTACCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

72.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

84.4

0.77

0.9

78.9

38.5

Minor 5ss

-2.2

3.2

39.6

45.9

Minor BPS

63.6

0.42

1.9

80.01

35.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043709

13975178 - 14007347

32170

ENSAPLT00000041561

13976406 - 14007347

30942