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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1398277_1402852_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1398277 - 1402852
Intron Length:
4576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACAC
5'SS Class:
major
3'SS Sequence:
TGTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGGGCAGTAACA
Flanking Amino Acid:
RAVLLDLGFSGFLSFLWFVA
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.48
1.1
59.5
39.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
30.5
-2.2
3.3
41.8
45
Minor BPS
46.3
-0.2
2.3
61.04
44.8

Associated Gene:

Gene:
SYNGR3
Ensembl Gene ID:
ENSAPLG00000019392
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040587
1394312 - 1407501
13190