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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14139015_14152920_R

Intron Information:

Intron Rank:
129464
Intron Class:
major
Intron Phase:
Intron Coordinates:
14139015 - 14152920
Intron Length:
13906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TCTGTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
55
44.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.1
0.79
0.8
83.9
31.1
Minor 5ss
49.5
-0
2.5
61.3
45.5
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016853
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023286
14138402 - 14153772
15371