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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14153021_14158666_F

Intron Information:

Intron Rank:
150017
Intron Class:
major
Intron Phase:
Intron Coordinates:
14153021 - 14158666
Intron Length:
5646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030674
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025614
14138124 - 14158798
20675