Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14241380_14242806_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14241380 - 14242806

Intron Length:

1427

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

AATCCATCAAAT

Flanking Amino Acid:

PAATYGVGAVNAFAPLTDAK

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

28.5

Major BPS

81.6

0.78

0.8

24.9

Major PPT

82.5

0.73

0.9

80.2

37.3

Minor 5ss

34.5

-1.8

3.3

45.9

43.7

Minor BPS

48.6

-0

1.9

40.5

Associated Gene:

Gene:

RBFOX1

Ensembl Gene ID:

ENSAPLG00000013263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038078

14241357 - 14402282

160926

ENSAPLT00000028614

14241257 - 14545701

304445

ENSAPLT00000043836

14241257 - 14520465

279209

ENSAPLT00000019819

14241379 - 14520465

279087

ENSAPLT00000043774

14241257 - 14527469

286213

ENSAPLT00000013817

14241257 - 14402282

161026

ENSAPLT00000038704

14241257 - 14545701

304445