Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14242883_14255348_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14242883 - 14255348

Intron Length:

12466

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAATC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

TTTCCATTAATC

Flanking Amino Acid:

ADEISCNTSAVTDEFMLQTP

Intron Amino Acid Position:

370

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

1.1

35.3

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

90.2

0.9

0.7

85.3

28.7

Minor 5ss

43.6

-0.7

2.9

43.6

Minor BPS

71.9

0.67

1.5

81.43

32.2

Associated Gene:

Gene:

RBFOX1

Ensembl Gene ID:

ENSAPLG00000013263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019819

14241379 - 14520465

279087

ENSAPLT00000038078

14241357 - 14402282

160926