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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14255402_14270979_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14255402 - 14270979
Intron Length:
15578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTATTGTGAATT
Flanking Amino Acid:
ATATAAAYSDRNQFVFVAAD
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
48.9
-0
2.1
70.06
41

Associated Gene:

Gene:
RBFOX1
Ensembl Gene ID:
ENSAPLG00000013263
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038078
14241357 - 14402282
160926
ENSAPLT00000019819
14241379 - 14520465
279087