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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14279534_14297048_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14279534 - 14297048
Intron Length:
17515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCATCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
CTAATATGGATG
Flanking Amino Acid:
APPPPIPAYGGVVYQDGFYG
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
69.6
42.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
76.4
0.59
0.9
69.5
36.7
Minor 5ss
31.2
-2.2
3.1
31.3
42.6
Minor BPS
40.8
-0.8
1.7
41.05
37.1

Associated Gene:

Gene:
RBFOX1
Ensembl Gene ID:
ENSAPLG00000013263
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013817
14241257 - 14402282
161026
ENSAPLT00000043836
14241257 - 14520465
279209
ENSAPLT00000019819
14241379 - 14520465
279087