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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14297182_14313815_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14297182 - 14313815
Intron Length:
16634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTAG
5'SS Class:
major
3'SS Sequence:
CTTCTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGAACTGAATA
Flanking Amino Acid:
APSSLVYTSTMPGFPYPAAT
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.6
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.3
0.77
0.7
79.3
26.3
Minor 5ss
44.9
-0.5
2.8
55.8
43
Minor BPS
54.1
0.13
1.7
66.3
39.9

Associated Gene:

Gene:
RBFOX1
Ensembl Gene ID:
ENSAPLG00000013263
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028614
14241257 - 14545701
304445
ENSAPLT00000019819
14241379 - 14520465
279087
ENSAPLT00000043836
14241257 - 14520465
279209
ENSAPLT00000013817
14241257 - 14402282
161026
ENSAPLT00000043774
14241257 - 14527469
286213
ENSAPLT00000038078
14241357 - 14402282
160926