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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14297182_14332516_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14297182 - 14332516
Intron Length:
35335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGAACTGAATA
Flanking Amino Acid:
GAVYSPEFYAVPGFPYPAAT
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.3
0.77
0.7
79.3
26.3
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
54.1
0.13
1.7
66.3
39.9

Associated Gene:

Gene:
RBFOX1
Ensembl Gene ID:
ENSAPLG00000013263
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038704
14241257 - 14545701
304445