Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14332571_14338753_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14332571 - 14338753

Intron Length:

6183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

ATGTTTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GTAATATTAACT

Flanking Amino Acid:

NKKTVNPYTNGWKLNPVVGA

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

76.8

31.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

76.1

0.59

70.1

40.8

Minor 5ss

33.1

-1.9

3.1

38.4

40.8

Minor BPS

60.5

0.41

1.6

75.78

Associated Gene:

Gene:

RBFOX1

Ensembl Gene ID:

ENSAPLG00000013263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028614

14241257 - 14545701

304445

ENSAPLT00000043836

14241257 - 14520465

279209

ENSAPLT00000019819

14241379 - 14520465

279087

ENSAPLT00000043774

14241257 - 14527469

286213

ENSAPLT00000013817

14241257 - 14402282

161026

ENSAPLT00000038704

14241257 - 14545701

304445

ENSAPLT00000038078

14241357 - 14402282

160926