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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14338815_14340595_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14338815 - 14340595
Intron Length:
1781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCATGTT
5'SS Class:
major
3'SS Sequence:
TCTATGTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CCTTTCTAATCC
Flanking Amino Acid:
GTVVEGRKIEVNNATARVMT
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
74.8
35.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
66.6
0.37
1
65.2
41
Minor 5ss
31.5
-2.1
3.6
48.8
47.4
Minor BPS
49.2
-0
2
60.84
45.1

Associated Gene:

Gene:
RBFOX1
Ensembl Gene ID:
ENSAPLG00000013263
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028614
14241257 - 14545701
304445
ENSAPLT00000043836
14241257 - 14520465
279209
ENSAPLT00000019819
14241379 - 14520465
279087
ENSAPLT00000043774
14241257 - 14527469
286213
ENSAPLT00000013817
14241257 - 14402282
161026
ENSAPLT00000038704
14241257 - 14545701
304445
ENSAPLT00000038078
14241357 - 14402282
160926