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Intron Name: Anas_platyrhynchos_platyrhynchos_15_14340689_14346874_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14340689 - 14346874

Intron Length:

6186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

CTCCTGCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGCAT

U12 Branch Point Sequence:

CCCTCCTGCATG

Flanking Amino Acid:

EIIFNERGSKGFGFVTFENS

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

59.8

0.25

1.5

71.4

45.1

Major PPT

71.4

0.48

0.9

65.3

35.2

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

45.9

-0.4

47.16

46.5

Associated Gene:

Gene:

RBFOX1

Ensembl Gene ID:

ENSAPLG00000013263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028614

14241257 - 14545701

304445

ENSAPLT00000043836

14241257 - 14520465

279209

ENSAPLT00000019819

14241379 - 14520465

279087

ENSAPLT00000043774

14241257 - 14527469

286213

ENSAPLT00000013817

14241257 - 14402282

161026

ENSAPLT00000038704

14241257 - 14545701

304445

ENSAPLT00000038078

14241357 - 14402282

160926