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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14349887_14397922_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14349887 - 14397922
Intron Length:
48036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTTATCCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCCTTTATC
Flanking Amino Acid:
NAQTVSGTATQTEDAAQTDG
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.2
38.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.9
0.76
0.7
82.1
29.7
Minor 5ss
35.7
-1.6
2.9
46.8
42.6
Minor BPS
78.4
0.88
1.5
86.75
30.6

Associated Gene:

Gene:
RBFOX1
Ensembl Gene ID:
ENSAPLG00000013263
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028614
14241257 - 14545701
304445
ENSAPLT00000043836
14241257 - 14520465
279209
ENSAPLT00000019819
14241379 - 14520465
279087
ENSAPLT00000043774
14241257 - 14527469
286213
ENSAPLT00000013817
14241257 - 14402282
161026
ENSAPLT00000038704
14241257 - 14545701
304445
ENSAPLT00000038078
14241357 - 14402282
160926