Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1435535_1436267_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1435535 - 1436267

Intron Length:

733

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCGG

5'SS Class:

major

3'SS Sequence:

TTTCTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

CATGTAATAACA

Flanking Amino Acid:

PAAARSPRSSASPDGRRGSA

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.1

57.6

46.8

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

93.7

0.98

0.6

92.5

17.4

Minor 5ss

29.5

-2.3

3.3

38.6

46.5

Minor BPS

46.2

-0.2

1.9

58.14

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039153

1435145 - 1436575

1431