About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_14398166_14520370_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14398166 - 14520370
Intron Length:
122205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TTGATCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTGATCTTCACA
Flanking Amino Acid:
AAPYFAGLVQGNQEATAPPD
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
84
0.85
0.9
75
39.9
Major PPT
78.1
0.63
0.9
72.4
37.7
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
59.4
0.29
1.8
71.36
41

Associated Gene:

Gene:
RBFOX1
Ensembl Gene ID:
ENSAPLG00000013263
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043774
14241257 - 14527469
286213
ENSAPLT00000019819
14241379 - 14520465
279087
ENSAPLT00000043836
14241257 - 14520465
279209