About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1451356_1451845_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1451356 - 1451845
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
ATTTTTTCAGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCCCTTTTATT
Flanking Amino Acid:
VGLMQCRKQKYMMFVSWSDQ
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
70.3
0.46
1.1
73.6
35.4
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
61
0.43
1.6
77.02
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029299
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040993
1451290 - 1455820
4531